PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G188200.1
Common NameB456_011G188200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 310aa    MW: 34445.3 Da    PI: 6.1683
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G188200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.4e-174795355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + GVr+++ +gr++AeIrdp++   + r++lg+f+ta eAa a+++a+ +++g
  Gorai.011G188200.1 47 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAAISMKG 95
                        56******.**********965...5***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-3246109IPR001471AP2/ERF domain
PROSITE profilePS5103220.3146103IPR001471AP2/ERF domain
CDDcd000182.78E-2946102No hitNo description
PRINTSPR003672.0E-74758IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2047103IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-2747102IPR001471AP2/ERF domain
PfamPF008471.5E-104995IPR001471AP2/ERF domain
PRINTSPR003672.0E-76985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDKGCGYEPL PQAHHLASTF MMLQRNKSSY QSGERRGRRK AAEPGRFLGV RRRPWGRYAA  60
EIRDPTTKER HWLGTFDTAH EAALAYDRAA ISMKGTQART NFVYFDHNNN TAFHSIMSPS  120
DVQSAVLPTP YHFLDLTTPQ SRPKQASNHS FAPQPDISHS ETKTLTQPNN TNGPIPLSSA  180
DNGFFFTNND DNSGNLACIV PYNCLKPPSN KSIDNQSQAL PKSNDIIGFP GFNELDQQGN  240
FMSDQQPWEI NSFELEAIFN HPPLIIGDEC TGTFYPSSYD MIPQPISSVD TCCFPLPSFG  300
DVVDLGYSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1847102359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A1e-1842102162ATERF1
2gcc_A1e-1842102162ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453881.10.0PREDICTED: ethylene-responsive transcription factor ERF086-like
SwissprotQ6J9Q22e-50ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLA0A0D2VNZ10.0A0A0D2VNZ1_G
STRINGPOPTR_0008s22750.11e-77(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54872650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.12e-46ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]